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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3392220_3395401_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3392220 - 3395401
Intron Length:
3182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATGTTTTCACAT
Flanking Amino Acid:
SISSFYYKERMSPRSARRRW
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.2
0.68
0.9
74.4
34.5
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
45.9
-0.2
1.8
62.99
41.6

Associated Gene:

Gene:
WDR59
Ensembl Gene ID:
ENSAPLG00000015680
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016420
3382035 - 3424175
42141