About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_34727_35702_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34727 - 35702
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTGCTCTTACA
Flanking Amino Acid:
TLSRPREIRVWSSPPEAIEL
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.2
35.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.4
0.82
0.8
80.4
31.7
Minor 5ss
41.6
-0.9
3.1
55.7
43.9
Minor BPS
51
0.02
2.1
71.87
40.1

Associated Gene:

Gene:
NUDT19
Ensembl Gene ID:
ENSAPLG00000011800
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041659
33639 - 36913
3275