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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_34727_36214_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34727 - 36214
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
TTTGCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTGCTCTTACA
Flanking Amino Acid:
EDEREVTACLWSSPPEAIEL
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
0.9
61.3
37.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.4
0.82
0.8
80.4
31.7
Minor 5ss
25.4
-2.8
3.1
27.6
37.3
Minor BPS
51
0.02
2.1
71.87
40.1

Associated Gene:

Gene:
NUDT19
Ensembl Gene ID:
ENSAPLG00000011800
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047871
33365 - 36913
3549