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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_34727_46440_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34727 - 46440
Intron Length:
11714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTGCTCTTACA
Flanking Amino Acid:
LKDLENEINQWSSPPEAIEL
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.4
0.82
0.8
80.4
31.7
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
51
0.02
2.1
71.87
40.1

Associated Gene:

Gene:
NUDT19
Ensembl Gene ID:
ENSAPLG00000011800
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012276
33365 - 46908
13544