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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3485346_3498522_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3485346 - 3498522
Intron Length:
13177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TCTTCCTTACTC
Flanking Amino Acid:
KVFDFAGEEVRVTKEVDATS
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
78.3
0.64
0.8
74.2
29.5
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
71.7
0.66
1.6
77.77
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015029
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015673
3477955 - 3501343
23389