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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3498642_3500132_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3498642 - 3500132
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
CCTGTATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGCAT
U12 Branch Point Sequence:
CCTTCCTGTATT
Flanking Amino Acid:
KAAVATQADKAEEEKNVKKL
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
58.4
0.21
1.3
69.4
37.7
Major PPT
74.7
0.56
0.9
68
36.6
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
55.6
0.26
1.8
72.35
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015029
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015673
3477955 - 3501343
23389