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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3500344_3500895_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3500344 - 3500895
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACG
5'SS Class:
major
3'SS Sequence:
CGTCTGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
AGGGTCTCAGCA
Flanking Amino Acid:
GRSSPRRPAARKRKKGGLVL
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
75.3
0.57
0.9
65.2
41.2
Minor 5ss
31.2
-2.2
3.3
39.9
45.9
Minor BPS
44.4
-0.4
1.8
50.29
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015029
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015673
3477955 - 3501343
23389