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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3516769_3521604_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3516769 - 3521604
Intron Length:
4836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GCTCCAGTAACT
Flanking Amino Acid:
PQRVMEDRDSQLRSQARALI
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
75.4
37.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.1
0.79
0.7
78.5
34.6
Minor 5ss
47.9
-0.2
2.8
65.3
45.9
Minor BPS
48.8
-0
2.3
71.56
44.7

Associated Gene:

Gene:
NUP93
Ensembl Gene ID:
ENSAPLG00000014016
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014675
3516658 - 3592549
75892