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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3526013_3527208_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3526013 - 3527208
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTCCTTTCATT
Flanking Amino Acid:
GKLENDGSRKPGVIDKFNSD
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.8
0.56
0.8
69.5
31.1
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
60
0.4
1.7
76.64
40.8

Associated Gene:

Gene:
NUP93
Ensembl Gene ID:
ENSAPLG00000014016
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014675
3516658 - 3592549
75892