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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3527884_3528118_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3527884 - 3528118
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGACGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACGT
Flanking Amino Acid:
LKSSGQSAQLLSHEAGDPPA
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
72.9
0.51
1
65.3
40.8
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
49.3
0.03
2
72.98
43.9

Associated Gene:

Gene:
NUP93
Ensembl Gene ID:
ENSAPLG00000014016
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014675
3516658 - 3592549
75892