About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3529232_3530005_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3529232 - 3530005
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGTG
5'SS Class:
major
3'SS Sequence:
TGAATGTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTTGAAT
Flanking Amino Acid:
DKTEDYLWLKLNQVCFDDDG
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
70.6
39.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69.5
0.44
1
66.1
44.9
Minor 5ss
34.5
-1.8
3.7
46.7
43.3
Minor BPS
71.5
0.76
1.3
87.4
31.4

Associated Gene:

Gene:
NUP93
Ensembl Gene ID:
ENSAPLG00000014016
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014675
3516658 - 3592549
75892