Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3534339_3535714_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3534339 - 3535714

Intron Length:

1376

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGCCA

5'SS Class:

major

3'SS Sequence:

GTGTTGTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

TCTGTGCTAACT

Flanking Amino Acid:

CAAVVELDDKDISDLWAMVK

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.1

56.2

42.6

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

74.5

0.55

68.1

42.3

Minor 5ss

-2.3

3.4

40.2

45.3

Minor BPS

46.9

-0.1

2.4

71.51

45.7

Associated Gene:

Gene:

NUP93

Ensembl Gene ID:

ENSAPLG00000014016

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014675

3516658 - 3592549

75892