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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3591022_3591564_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3591022 - 3591564
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTCTTCGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GATTTCATACCT
Flanking Amino Acid:
RTSQETADVKASVLLGSRGL
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
75.3
40.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
79.6
32.5
Minor 5ss
39.3
-1.2
2.7
48.5
40.3
Minor BPS
53.7
0.2
1.9
74.69
41.6

Associated Gene:

Gene:
NUP93
Ensembl Gene ID:
ENSAPLG00000014016
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014675
3516658 - 3592549
75892