Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3599846_3599978_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3599846 - 3599978

Intron Length:

133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAT

U12 Branch Point Sequence:

TTTGGCTCATTT

Flanking Amino Acid:

MDPQDCTCAAGDSCSCAGSC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

68.8

42.2

Major BPS

0.3

1.3

65.3

43.7

Major PPT

77.4

0.62

0.7

69.1

31.4

Minor 5ss

32.2

-2

3.1

37.3

42.5

Minor BPS

46.5

-0.1

2.2

71.65

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021636

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041613

3599194 - 3600009

816