About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3602870_3603441_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3602870 - 3603441
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CCCCCCTAAATT
Flanking Amino Acid:
KNCKCTSCKKGCCSCCPAGC
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74
0.54
0.8
64.8
30.7
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
53
0.17
1.8
64.41
46.6

Associated Gene:

Gene:
MT4
Ensembl Gene ID:
ENSAPLG00000013360
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013914
3602775 - 3603803
1029