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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3615020_3615337_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3615020 - 3615337
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATAATTG
5'SS Class:
weak_major
3'SS Sequence:
CTTGTTAAGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTGCCTCAATT
Flanking Amino Acid:
CISLFLQLLVG
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.1
51.4
40.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
61.9
0.27
1.1
59.5
40.8
Minor 5ss
49
-0.1
2.9
64.7
46.7
Minor BPS
64.9
0.55
1.7
79.83
42.7

Associated Gene:

Gene:
BBS2
Ensembl Gene ID:
ENSAPLG00000012564
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013155
3615017 - 3628740
13724