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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3617858_3618762_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3617858 - 3618762
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
CATACCCCATTG
Flanking Amino Acid:
DKTARYWRIKSKNHAMSIHA
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
72.7
38.3
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
82.6
0.73
0.8
80.8
31.2
Minor 5ss
30.9
-2.2
2.6
34.6
40.9
Minor BPS
39.6
-0.9
2
42.43
42.5

Associated Gene:

Gene:
BBS2
Ensembl Gene ID:
ENSAPLG00000012564
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036185
3615419 - 3633486
18068
ENSAPLT00000026018
3615419 - 3630784
15366
ENSAPLT00000013155
3615017 - 3628740
13724