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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3618850_3620130_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3618850 - 3620130
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTCTTGGAACT
Flanking Amino Acid:
ELITGWSNGKVDARSDRTGE
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
81.6
0.71
0.9
73.1
42.1
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
47.4
-0.1
2.1
70.54
40.4

Associated Gene:

Gene:
BBS2
Ensembl Gene ID:
ENSAPLG00000012564
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036185
3615419 - 3633486
18068
ENSAPLT00000026018
3615419 - 3630784
15366
ENSAPLT00000013155
3615017 - 3628740
13724