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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3624817_3625741_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3624817 - 3625741
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTGCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
NCTMNERPQRIVMWLNQSFL
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
78.3
32.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
1
77.2
41.6
Minor 5ss
38.9
-1.3
2.9
44.3
43.6
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
BBS2
Ensembl Gene ID:
ENSAPLG00000012564
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036185
3615419 - 3633486
18068
ENSAPLT00000026018
3615419 - 3630784
15366
ENSAPLT00000013155
3615017 - 3628740
13724