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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3627955_3628633_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3627955 - 3628633
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
AATAACTGAACT
Flanking Amino Acid:
QAIQRAGRLRVGKPKTQVIT
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.2
0.79
0.7
80.3
30.6
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
58
0.33
1.7
75.27
40.2

Associated Gene:

Gene:
BBS2
Ensembl Gene ID:
ENSAPLG00000012564
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036185
3615419 - 3633486
18068
ENSAPLT00000026018
3615419 - 3630784
15366
ENSAPLT00000013155
3615017 - 3628740
13724