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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3637444_3637559_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3637444 - 3637559
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTGCTGATACCT
Flanking Amino Acid:
QWNTRGPPNKRLYEAAEEDS
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
80.5
0.69
0.9
77.1
36.8
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
39.3
-0.7
2.3
57.2
45.6

Associated Gene:

Gene:
OGFOD1
Ensembl Gene ID:
ENSAPLG00000012283
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012802
3634353 - 3642468
8116