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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3640056_3640552_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3640056 - 3640552
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTATCTTAATC
Flanking Amino Acid:
GGTLDLFSTDEHFQPQKIMK
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.7
0.74
0.7
80.9
24.2
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
71.3
0.65
1.3
74.32
36.8

Associated Gene:

Gene:
OGFOD1
Ensembl Gene ID:
ENSAPLG00000012283
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012802
3634353 - 3642468
8116