About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3642738_3644733_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3642738 - 3644733
Intron Length:
1996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CTTTTCCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTCCTTATAG
Flanking Amino Acid:
KPLTLERTINLYPLTNYTFG
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.34
1.1
56.3
35
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
85.6
0.8
0.6
80.7
24.7
Minor 5ss
29.2
-2.4
3.4
44
43.3
Minor BPS
69.3
0.47
1.8
76.89
40.3

Associated Gene:

Gene:
NUDT21
Ensembl Gene ID:
ENSAPLG00000012153
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012649
3642622 - 3649388
6767