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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3654117_3655802_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3654117 - 3655802
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GCTTCTTTAAAC
Flanking Amino Acid:
VQLCKDRFEYLSFSPTTPMS
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
85.8
0.81
0.9
80.6
37
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
70
0.61
1.4
72.23
38.8

Associated Gene:

Gene:
AMFR
Ensembl Gene ID:
ENSAPLG00000011375
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011911
3650500 - 3678366
27867