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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3655956_3660249_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3655956 - 3660249
Intron Length:
4294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
ATGTTGTTAACG
Flanking Amino Acid:
MHTLAFMAAESLLVTVRTAH
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
87.9
0.85
0.7
83.4
24.8
Minor 5ss
28.9
-2.4
3.3
37.9
46.9
Minor BPS
56.9
0.08
2.1
64.94
43.2

Associated Gene:

Gene:
AMFR
Ensembl Gene ID:
ENSAPLG00000011375
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011911
3650500 - 3678366
27867