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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3660291_3660802_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3660291 - 3660802
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAAACATAAAAT
Flanking Amino Acid:
VTVRTAHVILRYVIHLWDLN
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
78.3
0.64
0.8
72.7
32
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
45
-0.3
2
60.49
41.9

Associated Gene:

Gene:
AMFR
Ensembl Gene ID:
ENSAPLG00000011375
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011911
3650500 - 3678366
27867