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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3661540_3663045_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3661540 - 3663045
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATGATTT
Flanking Amino Acid:
YLRVVGNMEARFAVATPEEL
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
91.8
0.94
0.6
88.4
21.2
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
48.2
-0
1.9
68.68
41.7

Associated Gene:

Gene:
AMFR
Ensembl Gene ID:
ENSAPLG00000011375
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011911
3650500 - 3678366
27867