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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3663157_3666437_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3663157 - 3666437
Intron Length:
3281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
GTTTTCCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAC
U12 Branch Point Sequence:
CTCACTACAATA
Flanking Amino Acid:
RKLPCGHLFHNSCLRSWLEQ
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.9
40
Major BPS
66
0.4
1.1
57.8
38.6
Major PPT
83.6
0.76
0.8
81.3
30.7
Minor 5ss
40.9
-1
3.1
51.9
39.6
Minor BPS
44.7
-0.4
1.8
52.75
39.9

Associated Gene:

Gene:
AMFR
Ensembl Gene ID:
ENSAPLG00000011375
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011911
3650500 - 3678366
27867