Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3666629_3668221_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3666629 - 3668221

Intron Length:

1593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGTTCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTCAT

U12 Branch Point Sequence:

TCCTGCTTCATT

Flanking Amino Acid:

NQHNHFFHFDGSRIASWLPS

Intron Amino Acid Position:

414

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

72.8

34.4

Major BPS

69.6

0.49

1.3

73.6

41.8

Major PPT

84.1

0.77

0.8

79.8

32.1

Minor 5ss

34.3

-1.8

2.8

37.6

42.2

Minor BPS

50.2

0.09

2.2

70.75

46.9

Associated Gene:

Gene:

AMFR

Ensembl Gene ID:

ENSAPLG00000011375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011911

3650500 - 3678366

27867