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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3668326_3670329_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3668326 - 3670329
Intron Length:
2004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTATCCCTGATA
Flanking Amino Acid:
QASNSQLNTMAHQIQEMFPQ
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
84.6
0.78
0.8
77.2
37.1
Minor 5ss
35.7
-1.6
3.2
45.3
43.7
Minor BPS
65
0.46
1.6
76.07
34.7

Associated Gene:

Gene:
AMFR
Ensembl Gene ID:
ENSAPLG00000011375
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011911
3650500 - 3678366
27867