Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3676675_3678138_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3676675 - 3678138

Intron Length:

1464

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTACGTTCC

5'SS Class:

major

3'SS Sequence:

TTTCCTCTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

CTCTGCTCACCC

Flanking Amino Acid:

RKEDLLQQARKRYLNKTSDE

Intron Amino Acid Position:

583

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

69.7

35.9

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

85.4

0.8

0.6

81.4

23.6

Minor 5ss

42.1

-0.9

2.9

53.6

37.6

Minor BPS

45.4

-0.3

2.2

57.93

47.1

Associated Gene:

Gene:

AMFR

Ensembl Gene ID:

ENSAPLG00000011375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011911

3650500 - 3678366

27867