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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3694563_3698014_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3694563 - 3698014
Intron Length:
3452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
TCGGCTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TTTTCCTTTCCT
Flanking Amino Acid:
PLTICFPEYTGPNSFTEAVA
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
71.1
0.48
0.9
64.3
36.7
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011027
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011491
3694375 - 3811780
117406