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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3698169_3704915_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3698169 - 3704915
Intron Length:
6747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCGGCCTGATGT
Flanking Amino Acid:
DQVLHEDETTNRMHESLKLF
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.4
0.82
0.7
81.3
29
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
44.5
-0.3
2.1
60.02
49.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011027
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044539
3697051 - 3811780
114730
ENSAPLT00000020797
3697051 - 3811780
114730
ENSAPLT00000011491
3694375 - 3811780
117406