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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3705046_3705559_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3705046 - 3705559
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CAAGCGCTGACG
Flanking Amino Acid:
THFTFKNLHFRLFDVGGQRS
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.9
42.7
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
66.6
0.37
0.9
59.5
35.7
Minor 5ss
34.2
-1.8
2.8
41.7
44.8
Minor BPS
38.9
-1
2.3
40.6
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011027
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020865
3683409 - 3811780
128372
ENSAPLT00000020797
3697051 - 3811780
114730
ENSAPLT00000011491
3694375 - 3811780
117406
ENSAPLT00000044539
3697051 - 3811780
114730