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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3705689_3728949_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3705689 - 3728949
Intron Length:
23261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTCTC
Flanking Amino Acid:
REYQLNDSAQYYLDSLDRIG
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.4
33.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
85.4
0.8
0.6
84.6
23.3
Minor 5ss
33.4
-1.9
2.7
39.9
32.9
Minor BPS
44.9
-0.4
3.6
73.85
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011027
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020797
3697051 - 3811780
114730
ENSAPLT00000011491
3694375 - 3811780
117406
ENSAPLT00000044539
3697051 - 3811780
114730
ENSAPLT00000020865
3683409 - 3811780
128372