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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3769712_3810992_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3769712 - 3810992
Intron Length:
41281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCATTCTCAACA
Flanking Amino Acid:
SGKSTIVKQMKIIHEDGFSG
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
72.5
37.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.9
0.79
0.8
77
37.3
Minor 5ss
34.7
-1.7
3.2
42
38.7
Minor BPS
59.1
0.28
1.6
63.77
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011027
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020865
3683409 - 3811780
128372
ENSAPLT00000020797
3697051 - 3811780
114730
ENSAPLT00000011491
3694375 - 3811780
117406
ENSAPLT00000044539
3697051 - 3811780
114730