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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3861_3952_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3861 - 3952
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGGGA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TTTTTGTTAACA
Flanking Amino Acid:
GPWCKLLKNKNPHVSFDFEH
Intron Amino Acid Position:
1181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
62.5
37.9
Major BPS
66.3
0.41
1
61
37.5
Major PPT
84.4
0.77
0.9
81
35.4
Minor 5ss
22.5
-3.2
3.3
29
43.5
Minor BPS
72.4
0.7
2
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011417
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011896
3649 - 30288
26640