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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3918111_3922771_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3918111 - 3922771
Intron Length:
4661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACTT
Flanking Amino Acid:
LGNEQWEFTLGMPLAQAVAI
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.6
37.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.6
0.91
0.7
85.1
28.5
Minor 5ss
34.4
-1.8
3.2
45.9
42.3
Minor BPS
64.2
0.52
1.5
79.54
37.3

Associated Gene:

Gene:
C16orf70
Ensembl Gene ID:
ENSAPLG00000005424
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034853
3918003 - 3951103
33101