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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3922627_3922771_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3922627 - 3922771
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACTT
Flanking Amino Acid:
KTGLCRYSESGMPLAQAVAI
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
43.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.6
0.91
0.7
85.1
28.5
Minor 5ss
46.1
-0.4
3.2
63.6
48.1
Minor BPS
64.2
0.52
1.5
79.54
37.3

Associated Gene:

Gene:
C16orf70
Ensembl Gene ID:
ENSAPLG00000005424
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005663
3922578 - 3950734
28157