Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3926551_3930883_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3926551 - 3930883

Intron Length:

4333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATAAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTGTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTACAAT

U12 Branch Point Sequence:

TTTCCTGTTACA

Flanking Amino Acid:

LFDAFNQRLKVIEVYDLTKV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

73.5

37.1

Major BPS

65.2

0.38

1.3

73.4

38.5

Major PPT

85.2

0.79

0.8

79.7

32.4

Minor 5ss

32.9

-2

2.9

45.6

Minor BPS

49.8

-0

2.3

72.64

39.2

Associated Gene:

Gene:

C16orf70

Ensembl Gene ID:

ENSAPLG00000005424

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034853

3918003 - 3951103

33101

ENSAPLT00000005663

3922578 - 3950734

28157