Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3945211_3947237_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3945211 - 3947237

Intron Length:

2027

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTCATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAA

U12 Branch Point Sequence:

TTTTCTTTCATA

Flanking Amino Acid:

EFKIPLVIKRDSADSQTETC

Intron Amino Acid Position:

331

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

77.8

38.7

Major BPS

64.7

0.37

31.5

Major PPT

0.83

0.6

24.2

Minor 5ss

29.7

-2.3

2.6

33.4

41.8

Minor BPS

71.1

0.66

1.7

82.68

32.7

Associated Gene:

Gene:

C16orf70

Ensembl Gene ID:

ENSAPLG00000005424

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034853

3918003 - 3951103

33101

ENSAPLT00000005663

3922578 - 3950734

28157