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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3977316_3978680_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3977316 - 3978680
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCGTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTCTTTTATCT
Flanking Amino Acid:
VTFLFQGQQFANRTLTPDDH
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80
0.67
0.8
76.8
31.9
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
61.1
0.43
1.6
77.62
38.8

Associated Gene:

Gene:
TRADD
Ensembl Gene ID:
ENSAPLG00000028061
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039688
3976011 - 3987092
11082