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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3980828_3984241_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3980828 - 3984241
Intron Length:
3414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCGTC
5'SS Class:
major
3'SS Sequence:
TTCTCCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
CATGCCTGGATA
Flanking Amino Acid:
VFKALKLALADSTGSVNGVD
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
61.7
43.7
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
75.7
0.58
0.9
69.5
36.8
Minor 5ss
45.4
-0.5
3.5
67.5
43.9
Minor BPS
50.8
0.02
1.6
59.48
40.7

Associated Gene:

Gene:
TRADD
Ensembl Gene ID:
ENSAPLG00000028061
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039688
3976011 - 3987092
11082