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Intron Name: Anas_platyrhynchos_platyrhynchos_12_3987130_3987715_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3987130 - 3987715

Intron Length:

586

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCTCGG

5'SS Class:

major

3'SS Sequence:

CTCCTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTCAG

U12 Branch Point Sequence:

TTCAGCTGACGC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.6

0.44

1.3

54.5

49.7

Major BPS

0.05

1.6

63.1

44.4

Major PPT

0.72

0.7

76.6

25.5

Minor 5ss

37.8

-1.4

3.1

46.3

Minor BPS

39.9

-0.7

2.2

51.34

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005559

3986631 - 3992251

5621