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Intron Name: Anas_platyrhynchos_platyrhynchos_12_3987852_3990622_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3987852 - 3990622

Intron Length:

2771

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTGAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

TTTTTTTGAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

77.8

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

82.6

0.73

0.9

35.4

Minor 5ss

30.7

-2.2

3.3

39.5

45.9

Minor BPS

74.5

0.77

1.3

83.67

29.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005559

3986631 - 3992251

5621