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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3990854_3991275_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3990854 - 3991275
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTTGTTTTACCT
Flanking Amino Acid:
SSSVWHFTEIRCDSEDEESM
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
87.5
0.84
0.7
85
29.6
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
63.6
0.5
1.7
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005390
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029500
3989259 - 3992251
2993
ENSAPLT00000005559
3986631 - 3992251
5621