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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3994062_3997029_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3994062 - 3997029
Intron Length:
2968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCGCCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GCGTTCTGACTT
Flanking Amino Acid:
ETNHLICWSTNGTSFHVFDQ
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.4
34.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
78.7
0.65
0.8
72.2
32.4
Minor 5ss
33.5
-1.9
3.1
42.4
44.3
Minor BPS
47.8
-0
1.7
60.5
43.7

Associated Gene:

Gene:
HSF4
Ensembl Gene ID:
ENSAPLG00000005338
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005556
3993939 - 4015138
21200