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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4003891_4006212_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4003891 - 4006212
Intron Length:
2322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAA
U12 Branch Point Sequence:
GAAAACAAACCT
Flanking Amino Acid:
NPSGAGIKRKLPLMLDNGLA
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.2
37.5
Major BPS
48.1
-0.1
0.9
53.4
30.8
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
39.9
-1.1
2.8
57.3
39.7
Minor BPS
36.7
-0.9
2
50.03
42.5

Associated Gene:

Gene:
HSF4
Ensembl Gene ID:
ENSAPLG00000005338
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005556
3993939 - 4015138
21200