About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4007194_4009478_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4007194 - 4009478
Intron Length:
2285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTGTCTCTGATG
Flanking Amino Acid:
INMQSPSDNDREKCLMLIKE
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78.6
35.9
Major BPS
79
0.72
1
69
38.9
Major PPT
71.3
0.48
1
65.5
40.2
Minor 5ss
43.3
-0.7
3
60.2
44.5
Minor BPS
53.8
-0
1.7
62.59
40.2

Associated Gene:

Gene:
HSF4
Ensembl Gene ID:
ENSAPLG00000005338
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005556
3993939 - 4015138
21200