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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4009698_4011586_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4009698 - 4011586
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TTTCCCTTGTCT
Flanking Amino Acid:
ERRGRRALLDRTDISDPLEG
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
85.3
0.8
0.7
84.1
30.8
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
51.5
0.13
3.5
89.05
35.6

Associated Gene:

Gene:
HSF4
Ensembl Gene ID:
ENSAPLG00000005338
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005556
3993939 - 4015138
21200